Search for: All records

Abstract Riverine silicon (Si) plays a vital role in governing primary production, water quality, and carbon cycling. Climate and land cover change have altered how dissolved Si (DSi) is processed on land, transported to rivers, and cycled through aquatic ecosystems. The Global Aggregation of Stream Silica (GlASS) database was constructed to assess changes in river Si concentrations and fluxes, their relationship to other nutrients (nitrogen (N) and phosphorus (P)), and to evaluate mechanisms driving the availability of Si. GlASS includes concentrations of DSi, dissolved inorganic N (NO₃, NO_x, and NH₄), and dissolved inorganic P (as soluble reactive P or PO₄-P) at daily to quarterly time steps from 1963 to 2024; daily discharge; and watershed characteristics for 421 rivers spanning eight climate zones. Original data sources are cited, data quality assurance workflows are public, and input files to a common load model are provided. GlASS offers critical data to address questions about patterns, controls, and trajectories of global river Si biogeochemistry and stoichiometry. 

Abstract This manuscript shares the lessons learned from providing scientific computing support to over 600 researchers and discipline experts, helping them develop reproducible and scalable analytical workflows to process large amounts of heterogeneous data.When providing scientific computing support, focus is first placed on how to foster the collaborative aspects of multidisciplinary projects on the technological side by providing virtual spaces to communicate and share documents. Then insights on data management planning and how to implement a centralized data management workflow for data‐driven projects are provided.Developing reproducible workflows requires the development of code. We describe tools and practices that have been successful in fostering collaborative coding and scaling on remote servers, enabling teams to iterate more efficiently. We have found short training sessions combined with on‐demand specialized support to be the most impactful combination in helping scientists develop their technical skills.Here we share our experiences in enabling researchers to do science more collaboratively and more reproducibly beyond any specific project, with long‐lasting effects on the way researchers conduct science. We hope that other groups supporting team‐ and data‐driven science (in environmental science and beyond) will benefit from the lessons we have learned over the years through trial and error. 

This is a set of Long Term Ecological Research (LTER) site boundaries preserved as a shapefile. Note that for some sites “real” boundaries are included while others–particularly marine sites–use a simpler bounding box method. Each site is listed both with its three-letter abbreviation and its unabbreviated name. World Geodetic System 1984 (WGS84) is the coordinate reference system used (EPSG:4326). More information about any of the sites can be found on the LTER Site Profiles page on the LTER Network website (https://lternet.edu/site). This data product was made possible by the contributions of the Information Managers for the LTER sites, each of whom contributed their sites' boundaries. 

Abstract The seasonal behavior of fluvial dissolved silica (DSi) concentrations, termedDSi regime, mediates the timing of DSi delivery to downstream waters and thus governs river biogeochemical function and aquatic community condition. Previous work identified five distinct DSi regimes across rivers spanning the Northern Hemisphere, with many rivers exhibiting multiple DSi regimes over time. Several potential drivers of DSi regime behavior have been identified at small scales, including climate, land cover, and lithology, and yet the large‐scale spatiotemporal controls on DSi regimes have not been identified. We evaluate the role of environmental variables on the behavior of DSi regimes in nearly 200 rivers across the Northern Hemisphere using random forest models. Our models aim to elucidate the controls that give rise to (a) average DSi regime behavior, (b) interannual variability in DSi regime behavior (i.e., Annual DSi regime), and (c) controls on DSi regime shape (i.e., minimum and maximum DSi concentrations). Average DSi regime behavior across the period of record was classified accurately 59% of the time, whereas Annual DSi regime behavior was classified accurately 80% of the time. Climate and primary productivity variables were important in predicting Average DSi regime behavior, whereas climate and hydrologic variables were important in predicting Annual DSi regime behavior. Median nitrogen and phosphorus concentrations were important drivers of minimum and maximum DSi concentrations, indicating that these macronutrients may be important for seasonal DSi drawdown and rebound. Our findings demonstrate that fluctuations in climate, hydrology, and nutrient availability of rivers shape the temporal availability of fluvial DSi. 

ABSTRACT Mast seeding, the synchronous and highly variable production of seed crops by perennial plants, is a population‐level phenomenon and has cascading effects in ecosystems. Mast seeding studies are typically conducted at the population/species level. Much less is known about synchrony in mast seeding between species because the necessary long‐term data are rarely available. To investigate synchrony between species within communities, we used long‐term data from seven forest communities in the U.S. Long‐Term Ecological Research (LTER) network, ranging from tropical rainforest to boreal forest. We focus on cross‐species synchrony and (i) quantify synchrony in reproduction overall and within LTER sites, (ii) test for relationships between synchrony with trait and phylogenetic similarity and (iii) investigate how climate conditions at sites are related to levels of synchrony. Overall, reproductive synchrony between woody plant species was greater than expected by chance, but spanned a wide range of values between species. Based on 11 functional and reproductive traits for 103 species (plus phylogenetic relatedness), cross‐species synchrony in reproduction was driven primarily by trait similarity with phylogeny being largely unimportant, and synchrony was higher in sites with greater climatic water deficit. Community‐level synchrony in masting has consequences for understanding forest regeneration dynamics and consumer‐resource interactions. 

Abstract Plants display a range of temporal patterns of inter‐annual reproduction, from relatively constant seed production to “mast seeding,” the synchronized and highly variable interannual seed production of plants within a population. Previous efforts have compiled global records of seed production in long‐lived plants to gain insight into seed production, forest and animal population dynamics, and the effects of global change on masting. Existing datasets focus on seed production dynamics at the population scale but are limited in their ability to examine community‐level mast seeding dynamics across different plant species at the continental scale. We harmonized decades of plant reproduction data for 141 woody plant species across nine Long‐Term Ecological Research (LTER) or long‐term ecological monitoring sites from a wide range of habitats across the United States. Plant reproduction data are reported annually between 1957 and 2021 and based on either seed traps or seed and/or cone counts on individual trees. A wide range of woody plant species including trees, shrubs, and lianas are represented within sites allowing for direct community‐level comparisons among species. We share code for filtering of data that enables the comparison of plot and individual tree data across sites. For each species, we compiled relevant life history attributes (e.g., seed mass, dispersal syndrome, seed longevity, sexual system) that may serve as important predictors of mast seeding in future analyses. To aid in phylogenetically informed analyses, we also share a phylogeny and phylogenetic distance matrix for all species in the dataset. These data can be used to investigate continent‐scale ecological properties of seed production, including individual and population variability, synchrony within and across species, and how these properties of seed production vary in relation to plant species traits and environmental conditions. In addition, these data can be used to assess how annual variability in seed production is associated with climate conditions and how that varies across populations, species, and regions. The dataset is released under a CC0 1.0 Universal public domain license. 

Abstract Fluvial silicon (Si) plays a critical role in controlling primary production, water quality, and carbon sequestration through supporting freshwater and marine diatom communities. Geological, biogeochemical, and hydrological processes, as well as climate and land use, dictate the amount of Si exported by streams. Understanding Si regimes—the seasonal patterns of Si concentrations—can help identify processes driving Si export. We analyzed Si concentrations from over 200 stream sites across the Northern Hemisphere to establish distinct Si regimes and evaluated how often sites moved among regimes over their period of record. We observed five distinct regimes across diverse stream sites, with nearly 60% of sites exhibiting multiple regime types over time. Our results indicate greater spatial and interannual variability in Si seasonality than previously recognized and highlight the need to characterize the watershed and climate variables that affect Si cycling across diverse ecosystems. 

This dataset includes monthly dissolved silicon (DSi) concentration data from 198 rivers across the Northern Hemisphere. Concentration and discharge data were sourced from public and/or published datasets and the Weighted Regressions on Time, Discharge, and Season model (Hirsch et al. 2010) was used to estimate monthly concentrations and flow-normalized concentrations for all sites over their period of record. Sites span eight climate zones, ranged from 18 degrees N to 70 degrees N, and vary in drainage area from < 1 km2 to nearly 3 million km2. These monthly concentration data were then used to cluster sites into average (i.e., average of all years) and annual (i.e., each year individually) seasonal regimes using a time-series clustering approach. The annual regimes were used to quantify how often a site moved among regimes over its period of record (i.e., stability). Site characteristics including climate zone, discharge, and concentration-discharge behavior were explored as potential drivers of cluster membership and stability. 

As droughts become longer and more intense, impacts on terrestrial primary productivity are expected to increase progressively. Yet, some ecosystems appear to acclimate to multiyear drought, with constant or diminishing reductions in productivity as drought duration increases. We quantified the combined effects of drought duration and intensity on aboveground productivity in 74 grasslands and shrublands distributed globally. Ecosystem acclimation with multiyear drought was observed overall, except when droughts were extreme (i.e., ≤1-in-100-year likelihood of occurrence). Productivity losses after four consecutive years of extreme drought increased by ~2.5-fold compared with those of the first year. These results portend a foundational shift in ecosystem behavior if drought duration and intensity increase, from maintenance of reduced functioning over time to progressive and profound losses of productivity when droughts are extreme.